The doctoral institute of the Institute of Agriculture and Agrotechnologies of Karakalpakstan trains personnel in the following areas.
- 01.05 – Selection and Seed Production;
- 01.09 – Plant Protection;
- 01.06 – Vegetable Growing;
- 01.02 – Land Reclamation and Irrigated Farming;
- 01.04 – Agrochemistry;
- 01.11 – Storage and Processing of Agricultural Products;
- 01.08 – Crop Production;
- 01.01 – General Agriculture. Cotton Growing;
- 01.07 – Fruit Growing and Viticulture;
- 01.10 – Land Management, Cadastre and Land Monitoring;
- 02.03 – Private Zootechnics. Technology of Livestock Product Production;
- 02.04 – Sericulture;
- 03.03 – Introduction of Medicinal Plants, Cultivation Technology and Agropharmacoecology;
- 03.01 – Forest Crops. Plant Breeding, Seed Production and Urban Landscaping. Agroforestry Reclamation and Establishment of Protective Forests;
- 07.01 – Agricultural Reclamation Machinery. Mechanization of Agricultural and Land Reclamation Works;
- 00.04 – Agricultural Economics;
- 00.10 – Ecology;
- 00.13 – Soil Science;
- 00.16 – Hydrobiology.